Table 2

Predictors of microsatellite status identified by Support Vector Machine and PAM algorithms.
Probe
 Symbol
Average expression
 p-value
 SVM* strength
 PAM* score


Gene name
 MSS
 MSI-H

MSI-H
 MSS
hsa-mir-223-prec
 miR-223
0.97
 1.84
 4.69E-02
 -
 0.4929
 -0.3429
hsa-mir-155-prec
 miR-155 (BIC)
0.97
 1.29
 2.34E-02
 -
 0.4439
 -0.3088
AL137343
 FAM84A
 family with sequence similarity 84, member A
 1.51
 0.45
 1.07E-02
 -
 -0.0208
 0.0145
NM_004183
 VMD2
 vitelliform macular dystrophy 2
 2.09
 0.38
 8.73E-03
 -
 -0.1832
 0.1274
NM_006113
 VAV3
 vav 3 oncogene
 1.62
 0.47
 5.98E-03
 13.96
 -0.0533
 0.0371
NM_005953
 MT2A
 metallothionein 2A
 0.57
 1.92
 5.93E-03
 16.34
 0.8995
 -0.6258
AK026372
 KIAA1718
1.27
 0.72
 5.09E-03
 16.02
 -
 -
hsa-mir-191-prec
 miR-191
1.28
 1.00
 4.74E-03
 -
 0.0377
 -0.0263
NM_017726
 PPP1R14D
 protein phosphatase 1, regulatory (inhibitor) subunit 14D
 1.31
 0.52
 3.88E-03
 14.58
 -
 -
NM_003212
 TDGF1
 teratocarcinoma-derived growth factor 1
 1.49
 0.76
 3.37E-03
 16.49
 -
 -
AF273051
 CCDC68
 coiled-coil domain containing 68
 2.21
 0.84
 2.49E-03
 15.87
 -0.0541
 0.0376
NM_016328
 GTF2IRD1
 GTF2I repeat domain containing 1
 1.49
 0.87
 2.13E-03
 13.13
 -
 -
NM_001657
 AREG
 amphiregulin
 2.10
 0.69
 1.04E-03
 -
 -0.0725
 0.0504
AB033045
 KIAA1219
 hypothetical protein LOC57148
 1.33
 0.83
 8.11E-04
 15.87
 -
 -
hsa-mir-032-precNo2
 miR-032
1.17
 0.91
 6.48E-04
 14.02
 0.0732
 -0.0509
NM_004485
 GNG4
 guanine nucleotide binding protein (G protein), gamma 4
 1.46
 0.81
 6.47E-04
 16.49
 -
 -
NM_018267
 H2AFJ
 H2A histone family, member J
 1.43
 0.92
 6.47E-04
 13.96
 -
 -
AK000276
 NKD1
 naked cuticle homolog 1
 2.47
 0.77
 4.55E-04
 17.48
 -0.1542
 0.1072
NM_003878
 GGH
 gamma-glutamyl hydrolase
 2.10
 0.61
 7.97E-05
 15.87
 -0.2232
 0.1553
AK025215
 C13ORF18
 chromosome 13 open reading frame 18
 2.41
 0.66
 4.40E-05
 16.49
 -0.3093
 0.2152
NM_017763
 RNF43
 ring finger protein 43
 2.10
 0.57
 2.91E-05
 17.48
 -0.2886
 0.2008
NM_004693
 K6HF
 cytokeratin type II
 1.24
 0.80
 2.91E-05
 14.6
 -
 -
NM_002657
 PLAGL2
 pleiomorphic adenoma gene-like 2
 1.37
 0.76
 2.91E-05
 19.32
 -
 -
hsa-mir-025-prec
 miR-025
1.52
 0.84
 2.14E-05
 17.48
 -
 -
hsa-mir-092-prec-13=092-1No2
 miR-092-1
1.50
 0.65
 1.87E-05
 17.48
 -
 -
hsa-mir-092-prec-X=092-2
 miR-092-2
1.60
 0.64
 1.87E-05
 14.43
 -
 -
hsa-mir-093-prec-7.1=093-1
 miR-093-1
1.23
 0.9
 1.87E-05
 -
 0.0084
 -0.0058

* SVM: Support Vector Machine; PAM: Prediction Analysis of Microarray

Lanza et al. Molecular Cancer 2007 6:54   doi:10.1186/1476-4598-6-54