Figure 1.

KEGG pathways identified to be significantly altered in cell lines and tumors (CL - T), cell lines and normal tissue (CL - N), and tumor and normal tissue (T - N) comparisons. The term frequency shown in the figure is defined as the ratio of tissue types for which a pathway identified as significantly altered to the total number of tissue types (6). KEGG pathways were identified as significantly altered by using a hypergeometric test with a p-value cutoff. The minimum number of SAM genes in each significantly altered pathway has been set to two. The error bars indicate the standard deviation of frequency for different p- value cutoffs (p = 0.001, 0.01, 0.05 and 0.1).