Table 2

Clones used for validation by FISH.

Gene name
Gene-specific-BAC clones
Location
Control clones
Location

EGFR
RP11-339F13
7p12
p275α7a
7 cen
CDK4
RP11-571M6
12q13-q14
RP11-467M14
12p13
MDM2
RP11-611O2, RP11-450G15
12q15
RP11-467M14
12p13
ESTs on 13q
RP11-94P17, RP11-406G20
13q32.2



RP11-364F8, RP11-151A6, RP11-113J24
13q33.3



a plasmid probe located at the centromere (cen) of chromosome 7. The specificity and location of the probes were confirmed by FISH on normal metaphases before hybridization on the TMAs. When clones were available, and in order to increase the signal, two or three BAC clones around the test gene or EST were hybridized together. Control FISH experiments on normal interphase nuclei were performed beforehand in order to ensure a unique signal when two BAC clones were hybridized together. BAC clones on 13q were purchased from the BACPAC Resources Center (Children's Hospital Oakland Research Institute, CHORI). All other clones were generously provided by Dr. Rocchi.

Ruano et al. Molecular Cancer 2006 5:39   doi:10.1186/1476-4598-5-39