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On-line Resources |
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| 1. Sequence Databases |
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| Nucleotide Sequence |
http://www.ncbi.nlm.nih.gov/ |
NCBI – GenBank |
| http://www.ebi.ac.uk/embl.html |
EMBL-EBI – Nucleotide Sequence Database |
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| http://www.ddbj.nig.ac.jp |
DNA Data Bank of Japan |
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| Transcript |
http://www.ncbi.nlm.nih.gov/UniGene/ |
NCBI – UniGene |
| http://mcb.harvard.edu/gilbert/EID/ |
The Exon-Intron Database |
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| http://www.ncbi.nlm.nih.gov/RefSeq/ |
NCBI – Reference Sequence |
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| http://genome.ucsc.edu/ |
UC – Santa Cruz – Genome Bioinformatics |
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| Protein |
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein |
NCBI – Entrez-Protein |
| http://pir.georgetown.edu/ |
Protein Information Resource |
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| http://www.expasy.org/sprot |
Swiss-Prot |
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| http://www.expasy.org/prosite |
PROSITE |
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| http://www.ebi.ac.uk/proteome/ |
EMBL-EBI – Proteome Analysis |
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| http://www.expasy.org/ch2d/ |
Swiss-2DPAGE |
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| 2. Signalling Pathways |
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| http://www.geneontology.org/ |
Gene Ontology Consortium |
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| http://www.genome.ad.jp/kegg |
Kyoto Encyclopedia of Genes and Genomes |
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| http://www.biocarta.com/ |
BioCarta |
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| 3. Human and non-human vertebrate genomes |
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| http://www.tigr.org/tdb/tgi.shtml |
The Institute for Genomic Research Gene Indices |
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| http://genome.ucsc.edu/ |
UC – Santa Cruz – Genome Bioinformatics |
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| http://www.sanger.ac.uk/HGP/ |
The Sanger Institute: Human Genome Project |
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| http://www.ensembl.org/ |
Ensembl Genome Browser |
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| http://genome.wustl.edu/ |
Washington U St. Louis Genome Sequencing Center |
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| http://www.ncbi.nlm.nih.gov/LocusLink |
NCBI – LocusLink |
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| http://www.gdb.org/ |
The Genome Database |
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| http://www.ncbi.nlm.nih.gov/SNP/ |
NCBI – Single Nucleotide Polymorphism database |
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| http://www.genelynx.org |
GeneLynx |
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| http://www.ncbi.nih.gov/IEB/Research/Acembly/index.html |
NCBI – Acembly/AceView |
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| http://gai.nci.nih.gov/html-snp/imagemaps.html |
NCI-CGAP – Comprehensive SNP Imagemaps |
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| http://www.informatics.jax.org/ |
Mouse Genome Informatics |
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| http://rgd.mcw.edu/ |
Rat Genome Database |
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| http://genome.jgi-psf.org/fugu6/fugu6.home.html |
Doe Joint Genome Institute (Fugu genome resource) |
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| 4. Human Genes and Diseases |
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| http://Bioinfo.weizmann.ac.il/cards/ |
GeneCards™ |
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| http://www.ncbi.nlm.nih.gov/Omim/ |
NCBI – Online Mendelian Inheritance in Man |
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| 5. Microarray and Gene Expression Databases |
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| SAGE |
http://www.sagenet.org/ |
SAGEnet |
| http://www.ncbi.nlm.nih.gov/SAGE/ |
NCBI – SAGEmap |
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| http://cgap.nci.nih.gov/SAGE |
NCI-CGAP – SAGE Genie |
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| Microarray |
http://www.ebi.ac.uk/arrayexpress |
EMBL-EBI – ArrayExpress |
| http://bodymap.ims.u-tokyo.ac.jp/ |
BODYMAP |
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| http://hugeindex.org/ |
Human Gene Expression Index |
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| http://genome-www5.stanford.edu |
Stanford Microarray Database |
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| http://www.longhornarraydatabase.org/ |
Longhorn Array Database |
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| 6. Cytogenetics |
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| http://www.wiley.com/legacy/products/subject/life/mitelman/ |
Mitelman's Catalog of Chromosome Aberrations in Cancer |
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| http://www.ncbi.nlm.nih.gov/sky/skyweb.cgi |
NCBI – SKY/M-FISH GH Database |
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| http://amba.charite.de/cgh/ |
Charité – Comparative Genomic Hybridization |
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| http://www.infobiogen.fr/services/chromcancer/ |
Atlas Chromosomes in Cancer |
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| http://www.progenetix.net/ |
Progenetix – Online CGH Database |
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| http://www.helsinki.fi/cmg/ |
Laboratory of Cytomolecular Genetics (CMG) |
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| 7. Molecular Cancer Sites |
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| http://cgap.nci.nih.gov/ |
NCI-CGAP (Cancer Genome Anatomy Project) |
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| The Tumor Gene Database |
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Garnis et al. Molecular Cancer 2004 3:9 doi:10.1186/1476-4598-3-9 |
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